| Server IP : 82.208.35.60 / Your IP : 216.73.216.89 Web Server : Apache/2.4.55 (FreeBSD) OpenSSL/1.1.1q-freebsd PHP/7.3.31 System : FreeBSD server7.d2m.cz 12.4-RELEASE-p9 FreeBSD 12.4-RELEASE-p9 GENERIC amd64 User : studiokobylisy_cz ( 1008) PHP Version : 7.3.31 Disable Function : NONE MySQL : OFF | cURL : ON | WGET : OFF | Perl : OFF | Python : OFF | Sudo : OFF | Pkexec : OFF Directory : /usr/ports/biology/p5-TrimGalore/ |
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PORTNAME= TrimGalore
DISTVERSION= 0.6.5
CATEGORIES= biology perl5 python
PKGNAMEPREFIX= p5-
MAINTAINER= jwb@FreeBSD.org
COMMENT= Wrapper around Cutadapt and FastQC for adapter and quality trimming
WWW= https://github.com/FelixKrueger/TrimGalore
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cutadapt>=2.5:biology/py-cutadapt@${PY_FLAVOR} \
fastqc>0:biology/fastqc
# Future: Can 3.4+ be determined from cutadapt dep?
USES= perl5 python:env,3.4+ shebangfix
USE_PERL5= run
USE_GITHUB= yes
SHEBANG_FILES= trim_galore
GH_ACCOUNT= FelixKrueger
NO_ARCH= yes
NO_BUILD= yes
SUB_FILES= trim_galore-test
do-install:
${INSTALL_SCRIPT} ${WRKSRC}/trim_galore ${STAGEDIR}${PREFIX}/bin
${INSTALL_SCRIPT} ${WRKDIR}/trim_galore-test ${STAGEDIR}${PREFIX}/bin
cd ${WRKSRC} && ${COPYTREE_SHARE} test_files ${STAGEDIR}${DATADIR}
.include <bsd.port.mk>