| Server IP : 82.208.35.60 / Your IP : 216.73.216.89 Web Server : Apache/2.4.55 (FreeBSD) OpenSSL/1.1.1q-freebsd PHP/7.3.31 System : FreeBSD server7.d2m.cz 12.4-RELEASE-p9 FreeBSD 12.4-RELEASE-p9 GENERIC amd64 User : studiokobylisy_cz ( 1008) PHP Version : 7.3.31 Disable Function : NONE MySQL : OFF | cURL : ON | WGET : OFF | Perl : OFF | Python : OFF | Sudo : OFF | Pkexec : OFF Directory : /usr/ports/biology/bwa/ |
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PORTNAME= bwa
PORTVERSION= 0.7.17
DISTVERSIONPREFIX=v
PORTREVISION= 1
CATEGORIES= biology
PATCH_SITES= https://github.com/lh3/bwa/commit/
PATCHFILES= 2a1ae7b6f34a96ea25be007ac9d91e57e9d32284.patch:-p1
MAINTAINER= jwb@FreeBSD.org
COMMENT= Burrows-Wheeler sequence aligner
WWW= https://sourceforge.net/projects/bio-bwa/
LICENSE= GPLv3
BROKEN_mips= fails to compile: cc1: unrecognized command line option "-msse2"
BROKEN_mips64= fails to compile: cc1: unrecognized command line option "-msse2"
BUILD_DEPENDS= simde>0:devel/simde
USES= gmake localbase perl5 shebangfix tar:bzip2
SHEBANG_FILES= qualfa2fq.pl xa2multi.pl
USE_PERL5= run
USE_GITHUB= yes
GH_ACCOUNT= lh3
PLIST_FILES= bin/bwa bin/qualfa2fq.pl bin/xa2multi.pl man/man1/bwa.1.gz
.include <bsd.port.options.mk>
.if ${ARCH} == amd64 || ${ARCH} == i386
# Avoid #error in emmintrin.h
CFLAGS+= -msse2
.endif
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/bwa ${STAGEDIR}${PREFIX}/bin
${INSTALL_SCRIPT} ${WRKSRC}/*.pl ${STAGEDIR}${PREFIX}/bin
${INSTALL_MAN} ${WRKSRC}/*.1 ${STAGEDIR}${MAN1PREFIX}/man/man1
.include <bsd.port.mk>